
Updated – Viruses Resources on Ebola Virus and other Filoviruses
Updated on 25 March 2015
Given the current dramatic evolution of the Ebola virus disease outbreak in West Africa, Dr. Jens H. Kuhn from the NIH/NIAID/IRF-Frederick has kindly compiled the following list of resources related to the Ebola virus and other filoviruses that were published in the journal Viruses and are hence openly available. We will update the list as new papers on the subject are published.
List of papers related to filoviruses
- Bale, S.; Dias, J. M.; Fusco, M. L.; Hashiguchi, T.; Wong, A. C.; Liu, T.; Keuhne, A. I.; Li, S.; Woods, V. L., Jr.; Chandran, K.; Dye, J. M.; Saphire, E. O., Structural basis for differential neutralization of ebolaviruses. Viruses 2012, 4(4), 447-470. doi:10.3390/v4040447
- Bao, Y.; Chetvernin, V.; Tatusova, T., PAirwise Sequence Comparison (PASC) and Its Application in the Classification of Filoviruses. Viruses 2012, 4(8), 1318-1327. doi:10.3390/v4081318
- Bhattacharyya, S.; Mulherkar, N.; Chandran, K., Endocytic pathways involved in filovirus entry: advances, implications and future directions. Viruses 2012, 4(12), 3647-3664. doi:10.3390/v4123647
- Bowick, G. C.; McAuley, A. J., Meta-analysis of high-throughput datasets reveals cellular responses following hemorrhagic fever virus infection. Viruses 2011, 3(5), 613-619. doi:10.3390/v3050613
- Bradfute, S. B.; Bavari, S., Correlates of immunity to filovirus infection. Viruses 2011, 3(7), 982-1000. doi:10.3390/v3070982
- Bradfute, S. B.; Warfield, K. L.; Bray, M., Mouse models for filovirus infections. Viruses 2012, 4(9), 1477-1508. doi:10.3390/v4091477
- Brauburger, K.; Hume, A. J.; Muhlberger, E.; Olejnik, J., Forty-five years of marburg virus research. Viruses 2012, 4(10), 1878-1927. doi:10.3390/v4101878
- Buhler, S.; Roddy, P.; Nolte, E.; Borchert, M., Clinical documentation and data transfer from ebola and marburg virus disease wards in outbreak settings: health care workers’ experiences and preferences. Viruses 2014, 6(2), 927-937. doi:10.3390/v6020927
- Cárdenas, W. B., Evasion of the Interferon-Mediated Antiviral Response by Filoviruses. Viruses 2010, 2(1) 262-282. doi:10.3390/v2010262
- Clark, D. V.; Jahrling, P. B.; Lawler, J. V., Clinical management of filovirus-infected patients. Viruses 2012, 4(9), 1668-1686. doi:10.3390/v4091668
- Friedrich, B. M.; Trefry, J. C.; Biggins, J. E.; Hensley, L. E.; Honko, A. N.; Smith, D. R.; Olinger, G. G., Potential vaccines and post-exposure treatments for filovirus infections. Viruses 2012, 4(9), 1619-1650. doi:10.3390/v4091619
- Gallaher, W.R.; Garry, R.F. Modeling of the Ebola Virus Delta Peptide Reveals a Potential Lytic Sequence Motif. Viruses 2015, 7, 285-305; doi:10.3390/v7010285.
- Gnirss, K.; Fiedler, M.; Kramer-Kuhl, A.; Bolduan, S.; Mittler, E.; Becker, S.; Schindler, M.; Pohlmann, S., Analysis of determinants in filovirus glycoproteins required for tetherin antagonism. Viruses 2014, 6(4), 1654-1671. doi:10.3390/v6041654
- Han, G.-Z.; Worobey, M., Homologous Recombination in Negative Sense RNA Viruses. Viruses 2011, 3(8), 1358-1373. doi:10.3390/v3081358
- He, J.; Kraft, A. J.; Fan, J.; Van Dyke, M.; Wang, L.; Bose, M. E.; Khanna, M.; Metallo, J. A.; Henrickson, K. J., Simultaneous Detection of CDC Category “A” DNA and RNA Bioterrorism Agents by Use of Multiplex PCR & RT-PCR Enzyme Hybridization Assays. Viruses 2009, 1(3), 441-459. doi:10.3390/v1030441
- Hirschberg, R.; Ward, L. A.; Kilgore, N.; Kurnat, R.; Schiltz, H.; Albrecht, M. T.; Christopher, G. W.; Nuzum, E., Challenges, progress, and opportunities: proceedings of the filovirus medical countermeasures workshop. Viruses 2014, 6(7), 2673-2697. doi:10.3390/v6072673
- Hofmann-Winkler, H.; Kaup, F.; Pohlmann, S., Host cell factors in filovirus entry: novel players, new insights. Viruses 2012, 4(12), 3336-3362. doi:10.3390/v4123336
- Horie, M.; Tomonaga, K., Non-Retroviral Fossils in Vertebrate Genomes. Viruses 2011, 3(10), 1837-1848. doi:10.3390/v3123336
- Hunt, C. L.; Lennemann, N. J.; Maury, W., Filovirus entry: a novelty in the viral fusion world. Viruses 2012, 4(2), 258-275. doi:10.3390/v4020258
- Iversen, P. L.; Warren, T. K.; Wells, J. B.; Garza, N. L.; Mourich, D. V.; Welch, L. S.; Panchal, R. G.; Bavari, S., Discovery and Early Development of AVI-7537 and AVI-7288 for the Treatment of Ebola Virus and Marburg Virus Infections. Viruses 2012, 4(11), 2806-2830. doi:10.3390/v4112806
- Jordan, I.; Munster, V. J.; Sandig, V., Authentication of the R06E Fruit Bat Cell Line. Viruses 2012, 4(5), 889-900. doi:10.3390/v4050889
- Judson, S.; Prescott, J.; Munster, V. Understanding Ebola Virus Transmission. Viruses 2015, 7, 511-521. doi:10.3390/v7020511
- Kilgore, N.; Nuzum, E. O., An interagency collaboration to facilitate development of filovirus medical countermeasures. Viruses 2012, 4(10), 2312-2316. doi:10.3390/v4102312
- Kohl, C.; Kurth, A., European Bats as Carriers of Viruses with Zoonotic Potential. Viruses 2014, 6(8), 3110-3128. doi:10.3390/v6083110
- Kota, K. P.; Benko, J. G.; Mudhasani, R.; Retterer, C.; Tran, J. P.; Bavari, S.; Panchal, R. G., High content image based analysis identifies cell cycle inhibitors as regulators of ebola virus infection. Viruses 2012, 4(10), 1865-1877. doi:10.3390/v4101865
- Krishnan, A.; Miller, E. H.; Herbert, A. S.; Ng, M.; Ndungo, E.; Whelan, S. P.; Dye, J. M.; Chandran, K., Niemann-Pick C1 (NPC1)/NPC1-like1 Chimeras Define Sequences Critical for NPC1’s Function as a Filovirus Entry Receptor. Viruses 2012, 4(11), 2471-2484. doi:10.3390/v4112471
- Kuhn, J.H.; Andersen, K.G.; Bào, Y.; Bavari, S.; Becker, S.; Bennett, R.S.; Bergman, N.H.; Blinkova, O.; Bradfute, S.; Brister, J.R.; Bukreyev, A.; Chandran, K.; Chepurnov, A.A.; Davey, R.A.; Dietzgen, R.G.; Doggett, N.A.; Dolnik, O.; Dye, J.M.; Enterlein, S.; Fenimore, P.W.; Formenty, P.; Freiberg, A.N.; Garry, R.F.; Garza, N.L.; Gire, S.K.; Gonzalez, J.-P.; Griffiths, A.; Happi, C.T.; Hensley, L.E.; Herbert, A.S.; Hevey, M.C.; Hoenen, T.; Honko, A.N.; Ignatyev, G.M.; Jahrling, P.B.; Johnson, J.C.; Johnson, K.M.; Kindrachuk, J.; Klenk, H.-D.; Kobinger, G.; Kochel, T.J.; Lackemeyer, M.G.; Leroy, E.M.; Lever, M.S.; Mühlberger, E.; Netesov, S.V.; Olinger, G.G.; Omilabu, S.A.; Palacios, G.; Panchal, R.G.; Park, D.J.; Patterson, J.L.; Paweska, J.T.; Peters, C.J.; Pettitt, J.; Pitt, L.; Radoshitzky, S.R.; Ryabchikova, E.I.; Ollmann Saphire, E.; Sabeti, P.C.; Sealfon, R.; Smither, S.J.; Sullivan, N.J.; Swanepoel, R.; Takada, A.; Towner, J.S.; van der Groen, G.; Volchkov, V.E.; Volchkova, V.A.; Wahl-Jensen, V.; Warren, T.K.; Warfield, K.L.; Weidmann, M.; Nichol, S.T.; Fackner, D.F.; Shestopalov, A.M. Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names. Viruses 2014, 6(9), 3663-3682. doi:10.3390/v6093663
- Kuhn, J.H.; Andersen, K.G.; Baize, S.; Bào, Y.; Bavari, S.; Berthet, N.; Blinkova, O.; Brister, J.R.; Clawson, A.N.; Fair, J.; Gabriel, M.; Garry, R.F.; Gire, S.K.; Goba, A.; Gonzalez, J.-P.; Günther, S.; Happi, C.T.; Jahrling, P.B.; Kapetshi, J.; Kobinger, G.; Kugelman, J.R.; Leroy, E.M.; Maganga, G.D.; Mbala, P.K.; Moses, L.M.; Muyembe-Tamfum, J.-J.; N’Faly, M.; Nichol, S.T.; Omilabu, S.A.; Palacios, G.; Park, D.J.; Paweska, J.T.; Radoshitzky, S.R.; Rossi, C.A.; Sabeti, P.C.; Schieffelin, J.S.; Schoepp, R.J.; Sealfon, R.; Swanepoel, R.; Towner, J.S.; Wada, J.; Wauquier, N.; Yozwiak, N.L.; Formenty, P. Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses 2014, 6, 4760-4799.
- Lackemeyer, M. G.; Kok-Mercado, F.; Wada, J.; Bollinger, L.; Kindrachuk, J.; Wahl-Jensen, V.; Kuhn, J. H.; Jahrling, P. B., ABSL-4 Aerobiology Biosafety and Technology at the NIH/NIAID Integrated Research Facility at Fort Detrick. Viruses 2014, 6(1), 137-150. doi:10.3390/v6010137
- Lauber, C.; Gorbalenya, A. E., Genetics-based classification of filoviruses calls for expanded sampling of genomic sequences. Viruses 2012, 4(9), 1425-1437. doi:10.3390/v4091425
- Leroy, E.; Gonzalez, J. P., Filovirus research in Gabon and equatorial Africa: the experience of a research center in the heart of Africa. Viruses 2012, 4(9), 1592-1604. doi:10.3390/v4091592
- Olejnik, J.; Ryabchikova, E.; Corley, R. B.; Muhlberger, E., Intracellular Events and Cell Fate in Filovirus Infection. Viruses 2011, 3(8), 1501-1531. doi:10.3390/v3081501
- Olival, K. J.; Hayman, D. T., Filoviruses in bats: current knowledge and future directions. Viruses 2014, 6(4), 1759-1788. doi:10.3390/v6041759
- Pegoraro, G.; Bavari, S.; Panchal, R. G., Shedding light on filovirus infection with high-content imaging. Viruses 2012, 4(8), 1354-1371. doi:10.3390/v4081354
- Perry, D. L.; Bollinger, L.; G, L. W., The Baboon (Papio spp.) as a Model of Human Ebola Virus Infection. Viruses 2012, 4(10), 2400-2416. doi:10.3390/v4102400
- Ramanan, P.; Shabman, R. S.; Brown, C. S.; Amarasinghe, G. K.; Basler, C. F.; Leung, D. W., Filoviral immune evasion mechanisms. Viruses 2011, 3(9), 1634-1649. doi:10.3390/v3091634
- Rossi, C.A.; Kearney, B.J.; Olschner, S.P.; Williams, P.L.; Robinson, C.G.; Heinrich, M.L.; Zovanyi, A.M.; Ingram, M.F.; Norwood, D.A.; Schoepp, R.J. Evaluation of ViroCyt® Virus Counter for Rapid Filovirus Quantitation. Viruses 2015, 7, 857-872. doi:10.3390/v7030857
- Selakovic, Z.; Opsenica, D.; Eaton, B.; Retterer, C.; Bavari, S.; Burnett, J. C.; Solaja, B. A.; Panchal, R. G., A limited structural modification results in a significantly more efficacious diazachrysene-based filovirus inhibitor. Viruses 2012, 4(8), 1279-1288. doi:10.3390/v4081279
- Shurtleff, A. C.; Biggins, J. E.; Keeney, A. E.; Zumbrun, E. E.; Bloomfield, H. A.; Kuehne, A.; Audet, J. L.; Alfson, K. J.; Griffiths, A.; Olinger, G. G.; Bavari, S., Standardization of the filovirus plaque assay for use in preclinical studies. Viruses 2012, 4(12), 3511-3530. doi:10.3390/v4123511
- Shurtleff, A. C.; Garza, N.; Lackemeyer, M.; Carrion, R., Jr.; Griffiths, A.; Patterson, J.; Edwin, S. S.; Bavari, S., The impact of regulations, safety considerations and physical limitations on research progress at maximum biocontainment. Viruses 2012, 4(12), 3932-3951. doi:10.3390/v4123932
- Simons, R. R.; Gale, P.; Horigan, V.; Snary, E. L.; Breed, A. C., Potential for introduction of bat-borne zoonotic viruses into the EU: a review. Viruses 2014, 6(5), 2084-2121. doi:10.3390/v6052084
- Smither, S. J.; Lever, M. S., A review of filovirus work and facilities at the defence science and technology laboratory porton down. Viruses 2012, 4(8), 1305-1317. doi:10.3390/v4081305
- Sobarzo, A.; Eskira, Y.; Herbert, A.S.; Kuehne, A.I.; Stonier, S.W.; Ochayon, D.E.; Fedida-Metula, S.; Balinandi, S.; Kislev, Y.; Tali, N.; Lewis, E.C.; Lutwama, J.J.; Dye, J.M.; Yavelsky, V.; Lobel, L. Immune Memory to Sudan Virus: Comparison between Two Separate Disease Outbreaks. Viruses 2015, 7, 37-51; doi:10.3390/v7010037
- Steward, J. A.; Lever, M. S., Evaluation of the Operator Protection Factors Offered by Positive Pressure Air Suits against Airborne Microbiological Challenge. Viruses 2012, 4(8), 1202-1211. doi:10.3390/v4081202
- Wahl-Jensen, V.; Bollinger, L.; Safronetz, D.; de Kok-Mercado, F.; Scott, D. P.; Ebihara, H., Use of the Syrian hamster as a new model of ebola virus disease and other viral hemorrhagic fevers. Viruses 2012, 4(12), 3754-3784. doi:10.3390/v4123754
- Warren, T.K.; Trefry, J.C.; Marko, S.T.; Chance, T.B.; Wells, J.B.; Pratt, W.D.; Johnson, J.C.; Mucker, E.M.; Norris, S.L.; Chappell, M.; Dye, J.M.; Honko, A.N. Euthanasia Assessment in Ebola Virus Infected Nonhuman Primates. Viruses 2014, 6, 4666-4682.
- Wojcechowskyj, J. A.; Doms, R. W., A Potent, Broad-Spectrum Antiviral Agent that Targets Viral Membranes. Viruses 2010, 2(5), 1106-1109. doi:10.3390/v2051106
- Yondola, M.; Carter, C., Un-“ESCRT”-ed Budding. Viruses 2011, 3(1), 26-31. doi:10.3390/v3010026
- Zumbrun, E. E.; Abdeltawab, N. F.; Bloomfield, H. A.; Chance, T. B.; Nichols, D. K.; Harrison, P. E.; Kotb, M.; Nalca, A., Development of a murine model for aerosolized ebolavirus infection using a panel of recombinant inbred mice. Viruses 2012, 4(12), 3468-3493. doi:10.3390/v4123468
- Zumbrun, E. E.; Bloomfield, H. A.; Dye, J. M.; Hunter, T. C.; Dabisch, P. A.; Garza, N. L.; Bramel, N. R.; Baker, R. J.; Williams, R. D.; Nichols, D. K.; Nalca, A., A characterization of aerosolized Sudan virus infection in african green monkeys, cynomolgus macaques, and rhesus macaques. Viruses 2012, 4(10), 2115-2136. doi:10.3390/v4102115