Dietrich Rordorf Dietrich Rordorf24 September 2014 Uncategorized

Updated – Viruses Resources on Ebola Virus and other Filoviruses

Updated on 25 March 2015

 

Given the current dramatic evolution of the Ebola virus disease outbreak in West Africa, Dr. Jens H. Kuhn from the NIH/NIAID/IRF-Frederick has kindly compiled the following list of resources related to the Ebola virus and other filoviruses that were published in the journal Viruses and are hence openly available. We will update the list as new papers on the subject are published.

 

List of papers related to filoviruses

  1. Bale, S.; Dias, J. M.; Fusco, M. L.; Hashiguchi, T.; Wong, A. C.; Liu, T.; Keuhne, A. I.; Li, S.; Woods, V. L., Jr.; Chandran, K.; Dye, J. M.; Saphire, E. O., Structural basis for differential neutralization of ebolaviruses. Viruses 2012, 4(4), 447-470. doi:10.3390/v4040447
  2. Bao, Y.; Chetvernin, V.; Tatusova, T., PAirwise Sequence Comparison (PASC) and Its Application in the Classification of Filoviruses. Viruses 2012, 4(8), 1318-1327. doi:10.3390/v4081318
  3. Bhattacharyya, S.; Mulherkar, N.; Chandran, K., Endocytic pathways involved in filovirus entry: advances, implications and future directions. Viruses 2012, 4(12), 3647-3664. doi:10.3390/v4123647
  4. Bowick, G. C.; McAuley, A. J., Meta-analysis of high-throughput datasets reveals cellular responses following hemorrhagic fever virus infection. Viruses 2011, 3(5), 613-619. doi:10.3390/v3050613
  5. Bradfute, S. B.; Bavari, S., Correlates of immunity to filovirus infection. Viruses 2011, 3(7), 982-1000. doi:10.3390/v3070982
  6. Bradfute, S. B.; Warfield, K. L.; Bray, M., Mouse models for filovirus infections. Viruses 2012, 4(9), 1477-1508. doi:10.3390/v4091477
  7. Brauburger, K.; Hume, A. J.; Muhlberger, E.; Olejnik, J., Forty-five years of marburg virus research. Viruses 2012, 4(10), 1878-1927. doi:10.3390/v4101878
  8. Buhler, S.; Roddy, P.; Nolte, E.; Borchert, M., Clinical documentation and data transfer from ebola and marburg virus disease wards in outbreak settings: health care workers’ experiences and preferences. Viruses 2014, 6(2), 927-937. doi:10.3390/v6020927
  9. Cárdenas, W. B., Evasion of the Interferon-Mediated Antiviral Response by Filoviruses. Viruses 2010, 2(1) 262-282. doi:10.3390/v2010262
  10. Clark, D. V.; Jahrling, P. B.; Lawler, J. V., Clinical management of filovirus-infected patients. Viruses 2012, 4(9), 1668-1686. doi:10.3390/v4091668
  11. Friedrich, B. M.; Trefry, J. C.; Biggins, J. E.; Hensley, L. E.; Honko, A. N.; Smith, D. R.; Olinger, G. G., Potential vaccines and post-exposure treatments for filovirus infections. Viruses 2012, 4(9), 1619-1650. doi:10.3390/v4091619
  12. Gallaher, W.R.; Garry, R.F. Modeling of the Ebola Virus Delta Peptide Reveals a Potential Lytic Sequence Motif. Viruses 2015, 7, 285-305; doi:10.3390/v7010285.
  13. Gnirss, K.; Fiedler, M.; Kramer-Kuhl, A.; Bolduan, S.; Mittler, E.; Becker, S.; Schindler, M.; Pohlmann, S., Analysis of determinants in filovirus glycoproteins required for tetherin antagonism. Viruses 2014, 6(4), 1654-1671. doi:10.3390/v6041654
  14. Han, G.-Z.; Worobey, M., Homologous Recombination in Negative Sense RNA Viruses. Viruses 2011, 3(8), 1358-1373. doi:10.3390/v3081358
  15. He, J.; Kraft, A. J.; Fan, J.; Van Dyke, M.; Wang, L.; Bose, M. E.; Khanna, M.; Metallo, J. A.; Henrickson, K. J., Simultaneous Detection of CDC Category “A” DNA and RNA Bioterrorism Agents by Use of Multiplex PCR & RT-PCR Enzyme Hybridization Assays. Viruses 2009, 1(3), 441-459. doi:10.3390/v1030441
  16. Hirschberg, R.; Ward, L. A.; Kilgore, N.; Kurnat, R.; Schiltz, H.; Albrecht, M. T.; Christopher, G. W.; Nuzum, E., Challenges, progress, and opportunities: proceedings of the filovirus medical countermeasures workshop. Viruses 2014, 6(7), 2673-2697. doi:10.3390/v6072673
  17. Hofmann-Winkler, H.; Kaup, F.; Pohlmann, S., Host cell factors in filovirus entry: novel players, new insights. Viruses 2012, 4(12), 3336-3362. doi:10.3390/v4123336
  18. Horie, M.; Tomonaga, K., Non-Retroviral Fossils in Vertebrate Genomes. Viruses 2011, 3(10), 1837-1848. doi:10.3390/v3123336
  19. Hunt, C. L.; Lennemann, N. J.; Maury, W., Filovirus entry: a novelty in the viral fusion world. Viruses 2012, 4(2), 258-275. doi:10.3390/v4020258
  20. Iversen, P. L.; Warren, T. K.; Wells, J. B.; Garza, N. L.; Mourich, D. V.; Welch, L. S.; Panchal, R. G.; Bavari, S., Discovery and Early Development of AVI-7537 and AVI-7288 for the Treatment of Ebola Virus and Marburg Virus Infections. Viruses 2012, 4(11), 2806-2830. doi:10.3390/v4112806
  21. Jordan, I.; Munster, V. J.; Sandig, V., Authentication of the R06E Fruit Bat Cell Line. Viruses 2012, 4(5), 889-900. doi:10.3390/v4050889
  22. Judson, S.; Prescott, J.; Munster, V. Understanding Ebola Virus Transmission. Viruses 2015, 7, 511-521. doi:10.3390/v7020511
  23. Kilgore, N.; Nuzum, E. O., An interagency collaboration to facilitate development of filovirus medical countermeasures. Viruses 2012, 4(10), 2312-2316. doi:10.3390/v4102312
  24. Kohl, C.; Kurth, A., European Bats as Carriers of Viruses with Zoonotic Potential. Viruses 2014, 6(8), 3110-3128. doi:10.3390/v6083110
  25. Kota, K. P.; Benko, J. G.; Mudhasani, R.; Retterer, C.; Tran, J. P.; Bavari, S.; Panchal, R. G., High content image based analysis identifies cell cycle inhibitors as regulators of ebola virus infection. Viruses 2012, 4(10), 1865-1877. doi:10.3390/v4101865
  26. Krishnan, A.; Miller, E. H.; Herbert, A. S.; Ng, M.; Ndungo, E.; Whelan, S. P.; Dye, J. M.; Chandran, K., Niemann-Pick C1 (NPC1)/NPC1-like1 Chimeras Define Sequences Critical for NPC1’s Function as a Filovirus Entry Receptor. Viruses 2012, 4(11), 2471-2484. doi:10.3390/v4112471
  27. Kuhn, J.H.; Andersen, K.G.; Bào, Y.; Bavari, S.; Becker, S.; Bennett, R.S.; Bergman, N.H.; Blinkova, O.; Bradfute, S.; Brister, J.R.; Bukreyev, A.; Chandran, K.; Chepurnov, A.A.; Davey, R.A.; Dietzgen, R.G.; Doggett, N.A.; Dolnik, O.; Dye, J.M.; Enterlein, S.; Fenimore, P.W.; Formenty, P.; Freiberg, A.N.; Garry, R.F.; Garza, N.L.; Gire, S.K.; Gonzalez, J.-P.; Griffiths, A.; Happi, C.T.; Hensley, L.E.; Herbert, A.S.; Hevey, M.C.; Hoenen, T.; Honko, A.N.; Ignatyev, G.M.; Jahrling, P.B.; Johnson, J.C.; Johnson, K.M.; Kindrachuk, J.; Klenk, H.-D.; Kobinger, G.; Kochel, T.J.; Lackemeyer, M.G.; Leroy, E.M.; Lever, M.S.; Mühlberger, E.; Netesov, S.V.; Olinger, G.G.; Omilabu, S.A.; Palacios, G.; Panchal, R.G.; Park, D.J.; Patterson, J.L.; Paweska, J.T.; Peters, C.J.; Pettitt, J.; Pitt, L.; Radoshitzky, S.R.; Ryabchikova, E.I.; Ollmann Saphire, E.; Sabeti, P.C.; Sealfon, R.; Smither, S.J.; Sullivan, N.J.; Swanepoel, R.; Takada, A.; Towner, J.S.; van der Groen, G.; Volchkov, V.E.; Volchkova, V.A.; Wahl-Jensen, V.; Warren, T.K.; Warfield, K.L.; Weidmann, M.; Nichol, S.T.; Fackner, D.F.; Shestopalov, A.M. Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names. Viruses 2014, 6(9), 3663-3682. doi:10.3390/v6093663
  28. Kuhn, J.H.; Andersen, K.G.; Baize, S.; Bào, Y.; Bavari, S.; Berthet, N.; Blinkova, O.; Brister, J.R.; Clawson, A.N.; Fair, J.; Gabriel, M.; Garry, R.F.; Gire, S.K.; Goba, A.; Gonzalez, J.-P.; Günther, S.; Happi, C.T.; Jahrling, P.B.; Kapetshi, J.; Kobinger, G.; Kugelman, J.R.; Leroy, E.M.; Maganga, G.D.; Mbala, P.K.; Moses, L.M.; Muyembe-Tamfum, J.-J.; N’Faly, M.; Nichol, S.T.; Omilabu, S.A.; Palacios, G.; Park, D.J.; Paweska, J.T.; Radoshitzky, S.R.; Rossi, C.A.; Sabeti, P.C.; Schieffelin, J.S.; Schoepp, R.J.; Sealfon, R.; Swanepoel, R.; Towner, J.S.; Wada, J.; Wauquier, N.; Yozwiak, N.L.; Formenty, P. Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses 2014, 6, 4760-4799.
  29. Lackemeyer, M. G.; Kok-Mercado, F.; Wada, J.; Bollinger, L.; Kindrachuk, J.; Wahl-Jensen, V.; Kuhn, J. H.; Jahrling, P. B., ABSL-4 Aerobiology Biosafety and Technology at the NIH/NIAID Integrated Research Facility at Fort Detrick. Viruses 2014, 6(1), 137-150. doi:10.3390/v6010137
  30. Lauber, C.; Gorbalenya, A. E., Genetics-based classification of filoviruses calls for expanded sampling of genomic sequences. Viruses 2012, 4(9), 1425-1437. doi:10.3390/v4091425
  31. Leroy, E.; Gonzalez, J. P., Filovirus research in Gabon and equatorial Africa: the experience of a research center in the heart of Africa. Viruses 2012, 4(9), 1592-1604. doi:10.3390/v4091592
  32. Olejnik, J.; Ryabchikova, E.; Corley, R. B.; Muhlberger, E., Intracellular Events and Cell Fate in Filovirus Infection. Viruses 2011, 3(8), 1501-1531. doi:10.3390/v3081501
  33. Olival, K. J.; Hayman, D. T., Filoviruses in bats: current knowledge and future directions. Viruses 2014, 6(4), 1759-1788. doi:10.3390/v6041759
  34. Pegoraro, G.; Bavari, S.; Panchal, R. G., Shedding light on filovirus infection with high-content imaging. Viruses 2012, 4(8), 1354-1371. doi:10.3390/v4081354
  35. Perry, D. L.; Bollinger, L.; G, L. W., The Baboon (Papio spp.) as a Model of Human Ebola Virus Infection. Viruses 2012, 4(10), 2400-2416. doi:10.3390/v4102400
  36. Ramanan, P.; Shabman, R. S.; Brown, C. S.; Amarasinghe, G. K.; Basler, C. F.; Leung, D. W., Filoviral immune evasion mechanisms. Viruses 2011, 3(9), 1634-1649. doi:10.3390/v3091634
  37. Rossi, C.A.; Kearney, B.J.; Olschner, S.P.; Williams, P.L.; Robinson, C.G.; Heinrich, M.L.; Zovanyi, A.M.; Ingram, M.F.; Norwood, D.A.; Schoepp, R.J. Evaluation of ViroCyt® Virus Counter for Rapid Filovirus Quantitation. Viruses 2015, 7, 857-872. doi:10.3390/v7030857
  38. Selakovic, Z.; Opsenica, D.; Eaton, B.; Retterer, C.; Bavari, S.; Burnett, J. C.; Solaja, B. A.; Panchal, R. G., A limited structural modification results in a significantly more efficacious diazachrysene-based filovirus inhibitor. Viruses 2012, 4(8), 1279-1288. doi:10.3390/v4081279
  39. Shurtleff, A. C.; Biggins, J. E.; Keeney, A. E.; Zumbrun, E. E.; Bloomfield, H. A.; Kuehne, A.; Audet, J. L.; Alfson, K. J.; Griffiths, A.; Olinger, G. G.; Bavari, S., Standardization of the filovirus plaque assay for use in preclinical studies. Viruses 2012, 4(12), 3511-3530. doi:10.3390/v4123511
  40. Shurtleff, A. C.; Garza, N.; Lackemeyer, M.; Carrion, R., Jr.; Griffiths, A.; Patterson, J.; Edwin, S. S.; Bavari, S., The impact of regulations, safety considerations and physical limitations on research progress at maximum biocontainment. Viruses 2012, 4(12), 3932-3951. doi:10.3390/v4123932
  41. Simons, R. R.; Gale, P.; Horigan, V.; Snary, E. L.; Breed, A. C., Potential for introduction of bat-borne zoonotic viruses into the EU: a review. Viruses 2014, 6(5), 2084-2121. doi:10.3390/v6052084
  42. Smither, S. J.; Lever, M. S., A review of filovirus work and facilities at the defence science and technology laboratory porton down. Viruses 2012, 4(8), 1305-1317. doi:10.3390/v4081305
  43. Sobarzo, A.; Eskira, Y.; Herbert, A.S.; Kuehne, A.I.; Stonier, S.W.; Ochayon, D.E.; Fedida-Metula, S.; Balinandi, S.; Kislev, Y.; Tali, N.; Lewis, E.C.; Lutwama, J.J.; Dye, J.M.; Yavelsky, V.; Lobel, L. Immune Memory to Sudan Virus: Comparison between Two Separate Disease Outbreaks. Viruses 2015, 7, 37-51; doi:10.3390/v7010037
  44. Steward, J. A.; Lever, M. S., Evaluation of the Operator Protection Factors Offered by Positive Pressure Air Suits against Airborne Microbiological Challenge. Viruses 2012, 4(8), 1202-1211. doi:10.3390/v4081202
  45. Wahl-Jensen, V.; Bollinger, L.; Safronetz, D.; de Kok-Mercado, F.; Scott, D. P.; Ebihara, H., Use of the Syrian hamster as a new model of ebola virus disease and other viral hemorrhagic fevers. Viruses 2012, 4(12), 3754-3784. doi:10.3390/v4123754
  46. Warren, T.K.; Trefry, J.C.; Marko, S.T.; Chance, T.B.; Wells, J.B.; Pratt, W.D.; Johnson, J.C.; Mucker, E.M.; Norris, S.L.; Chappell, M.; Dye, J.M.; Honko, A.N. Euthanasia Assessment in Ebola Virus Infected Nonhuman Primates. Viruses 2014, 6, 4666-4682.
  47. Wojcechowskyj, J. A.; Doms, R. W., A Potent, Broad-Spectrum Antiviral Agent that Targets Viral Membranes. Viruses 2010, 2(5), 1106-1109. doi:10.3390/v2051106
  48. Yondola, M.; Carter, C., Un-“ESCRT”-ed Budding. Viruses 2011, 3(1), 26-31. doi:10.3390/v3010026
  49. Zumbrun, E. E.; Abdeltawab, N. F.; Bloomfield, H. A.; Chance, T. B.; Nichols, D. K.; Harrison, P. E.; Kotb, M.; Nalca, A., Development of a murine model for aerosolized ebolavirus infection using a panel of recombinant inbred mice. Viruses 2012, 4(12), 3468-3493. doi:10.3390/v4123468
  50. Zumbrun, E. E.; Bloomfield, H. A.; Dye, J. M.; Hunter, T. C.; Dabisch, P. A.; Garza, N. L.; Bramel, N. R.; Baker, R. J.; Williams, R. D.; Nichols, D. K.; Nalca, A., A characterization of aerosolized Sudan virus infection in african green monkeys, cynomolgus macaques, and rhesus macaques. Viruses 2012, 4(10), 2115-2136. doi:10.3390/v4102115